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webinars [2022/04/13 15:35] – Aida Ouangraouawebinars [2024/10/14 20:24] (current) – [Past webinars] Alexey Markin
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-===== Online journal club =====+===== Online journal club (ISCB Academy webinars)=====
  
 ISCB and SMBE are collaborating to organize an online journal club (as part of the ISCBacademy series of webinars) on Evolution and Comparative Genomics. ISCB and SMBE are collaborating to organize an online journal club (as part of the ISCBacademy series of webinars) on Evolution and Comparative Genomics.
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 ===== Next webinar ===== ===== Next webinar =====
  
-** Wednesday April 13, 2022 at 10:30AM EDT**+To be announced soon! 
 + 
 + 
 + 
 +===== Past webinars ===== 
 + 
 +** April 25, 2024 ** 
 + 
 +**Title: Reconstructing the horizontal movement of genes using Bayesian phylogenetic network inference** 
 + 
 +by **Nicola F. Müller** (University of California San Francisco). 
 + 
 +Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2024#133]] 
 + 
 +Read the article : [[https://www.nature.com/articles/s41467-022-31749-8]] 
 + 
 +Watch the webinar : [[https://www.youtube.com/watch?v=8HbYg6ki5cg]] 
 + 
 +-------------------- 
 + 
 +** November 10, 2023 ** 
 + 
 +**Title: Phylogenetic network estimation from site patterns using composite likelihood** 
 + 
 +by **Sungsik Kong** (University of Wisconsin-Madison). 
 + 
 +Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2023#124]] 
 + 
 +Read the article : [[https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syae054/7817714]] 
 + 
 +Watch the webinar : [[https://www.youtube.com/watch?v=OONdZfSLh0A]] 
 + 
 +-------------------- 
 + 
 +** Tuesday  April 11, 2023 at 10:30AM EDT** 
 + 
 +**Title: Machine learning enables prediction of metabolic system evolution in bacteria** 
 + 
 +by **Naoki Konno** (University of Tokyo). 
 + 
 +Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2023#102]] 
 + 
 +Read the article : https://www.science.org/doi/full/10.1126/sciadv.adc9130 
 + 
 +Watch the webinar : https://www.youtube.com/watch?v=16aRqv15bOI 
 + 
 +-------------------- 
 + 
 +** Tuesday November 1, 2022 at 10:30AM EDT** 
 + 
 +**Title: Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses** 
 + 
 +by **Mohammed El-Kebir** (University of illinois). 
 + 
 +Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2022#84]] 
 + 
 +Read the article : https://academic.oup.com/mbe/article/39/7/msac133/6608352 
 + 
 +Watch the webinar : https://www.youtube.com/watch?v=k8YwpMmv9lE 
 + 
 +-------------------- 
 + 
 +** Wednesday April 12, 2022 at 10:30AM EDT**
  
 **Title: Combining evolution and proteomics to discover protein complexes conserved across plants** **Title: Combining evolution and proteomics to discover protein complexes conserved across plants**
  
-by **Claire McWhite** (Priceton University)+by **Claire McWhite** (University of Texas at Austin).
  
-Read the summary : [[https://www.iscb.org/iscbacademy-upcoming#mcwhite]]+Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2022#64]]
  
 Read the article : [[https://doi.org/10.1016/j.cell.2020.02.049]] Read the article : [[https://doi.org/10.1016/j.cell.2020.02.049]]
  
-Registration : [[https://www.iscb.org/cms_addon/registration_conference/cosi28]]+Watch the webinar : https://www.youtube.com/watch?v=bJzCYAi1guA
  
 +--------------------
  
-===== Past webinars ===== +** Tuesday November 2, 2021 at 11:00AM EDT**
- +
-** Tuesday November 2, 2021 at 11:00AM EDT**:+
  
 **Title: Scalable Inference of Phylogentetic Networks** **Title: Scalable Inference of Phylogentetic Networks**
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 by **Claudia Solis-Lemus** (University of Wisconsin). by **Claudia Solis-Lemus** (University of Wisconsin).
  
-Read the summary : [[https://www.iscb.org/iscbacademy-upcoming#solis-lemus]]+Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2021#49]]
  
 Read the articles : [[https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005896]]; [[https://arxiv.org/abs/2010.01758]] Read the articles : [[https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005896]]; [[https://arxiv.org/abs/2010.01758]]
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 -------------------- --------------------
  
-**Wednesday September 30, 2020 at 11:00AM EDT**:+** Thursday January 28, 2021 at 11:00AM EDT** 
 + 
 +**Title: SaGePhy: A phylogenetic simulation framework for gene and subgene evolution** 
 + 
 +by **Soumya Kundu** (University of Connecticut). 
 + 
 +Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2021#32]] 
 + 
 +Read the article : https://academic.oup.com/bioinformatics/article/35/18/3496/5305633 
 + 
 +Watch the webinar : https://www.youtube.com/watch?v=P8P_yDeInN4 
 + 
 +-------------------- 
 + 
 +**Wednesday September 30, 2020 at 11:00AM EDT**
  
 **RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference**  **RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference** 
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 by **Alexey Kozlov and Alexandros Stamatakis** (Heidelberg Institute for Theoretical Studies). by **Alexey Kozlov and Alexandros Stamatakis** (Heidelberg Institute for Theoretical Studies).
  
-Read the summary : https://www.iscb.org/iscbacademy-upcoming#kozlov+Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#24
  
 Read the article : https://academic.oup.com/bioinformatics/article/35/21/4453/5487384 Read the article : https://academic.oup.com/bioinformatics/article/35/21/4453/5487384
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 -------------------- --------------------
  
-**Monday August 24, 2020**:+**Monday August 24, 2020**
  
 **Unravelling the mystery of orphan genes to understand the origins of genetic novelty**  **Unravelling the mystery of orphan genes to understand the origins of genetic novelty** 
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 presented by **Nikos Vakirlis** (Alexander Fleming Biomedical Sciences Research Center). presented by **Nikos Vakirlis** (Alexander Fleming Biomedical Sciences Research Center).
  
-Read the summary : https://www.iscb.org/iscbacademy-archive#vakirlis+Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#22
  
 Read the articles : https://doi.org/10.7554/eLife.53500 ; https://doi.org/10.1038/s41467-020-14500-z Read the articles : https://doi.org/10.7554/eLife.53500 ; https://doi.org/10.1038/s41467-020-14500-z
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 -------------------- --------------------
  
-**Tuesday July 7, 2020**:+**Tuesday July 7, 2020**
  
 **Genetic Basis Of De Novo Appearance Of Carotenoid Ornamentation In Bare-Parts Of Canaries** **Genetic Basis Of De Novo Appearance Of Carotenoid Ornamentation In Bare-Parts Of Canaries**
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 presented by **Malgorzata Gazda** (Universidade do Porto). presented by **Malgorzata Gazda** (Universidade do Porto).
  
-Read the summary : https://www.iscb.org/iscbacademy-archive#gazda+Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#18
  
 Read the article : https://doi.org/10.1093/molbev/msaa006 Read the article : https://doi.org/10.1093/molbev/msaa006
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 -------------------- --------------------
  
-**Friday June 12, 2020**: +**Friday June 12, 2020**
  
 **Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies**  **Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies** 
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 presented by **Erfan Sayyari** (UCSD). presented by **Erfan Sayyari** (UCSD).
  
-Read the summary : https://www.iscb.org/iscbacademy-archive#sayyari+Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#14
  
 Read the article : https://doi.org/10.1093/molbev/msw079 Read the article : https://doi.org/10.1093/molbev/msw079
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