✎ webinars [EvolCompGen]

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===== Online journal club (ISCB Academy webinars)=====

ISCB and SMBE are collaborating to organize an online journal club (as part of the ISCBacademy series of webinars) on Evolution and Comparative Genomics.

The format of webinars is that abstract/papers are presented by their first author to promote presentations by young researchers, and questions and answers are exchanged throughout the presentation to value discussion and attendee input.

If you are interested in presenting, or you want to suggest an article of interest, please send an abstract to <webinar@evolcompgen.org> with “Abstract for Webinar” as the title of your message.

Participation is free for any member of ISCB or SMBE, but registration is required.

===== Next webinar =====

To be announced soon!

===== Past webinars =====

** April 25, 2024 **

**Title: Reconstructing the horizontal movement of genes using Bayesian phylogenetic network inference**

by **Nicola F. Müller** (University of California San Francisco).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2024#133]]

Read the article : [[https://www.nature.com/articles/s41467-022-31749-8]]

Watch the webinar : [[https://www.youtube.com/watch?v=8HbYg6ki5cg]]

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** November 10, 2023 **

**Title: Phylogenetic network estimation from site patterns using composite likelihood**

by **Sungsik Kong** (University of Wisconsin-Madison).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2023#124]]

Read the article : [[https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syae054/7817714]]

Watch the webinar : [[https://www.youtube.com/watch?v=OONdZfSLh0A]]

--------------------

** Tuesday  April 11, 2023 at 10:30AM EDT**

**Title: Machine learning enables prediction of metabolic system evolution in bacteria**

by **Naoki Konno** (University of Tokyo).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2023#102]]

Read the article : https://www.science.org/doi/full/10.1126/sciadv.adc9130

Watch the webinar : https://www.youtube.com/watch?v=16aRqv15bOI

--------------------

** Tuesday November 1, 2022 at 10:30AM EDT**

**Title: Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses**

by **Mohammed El-Kebir** (University of illinois).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2022#84]]

Read the article : https://academic.oup.com/mbe/article/39/7/msac133/6608352

Watch the webinar : https://www.youtube.com/watch?v=k8YwpMmv9lE

--------------------

** Wednesday April 12, 2022 at 10:30AM EDT**

**Title: Combining evolution and proteomics to discover protein complexes conserved across plants**

by **Claire McWhite** (University of Texas at Austin).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2022#64]]

Read the article : [[https://doi.org/10.1016/j.cell.2020.02.049]]

Watch the webinar : https://www.youtube.com/watch?v=bJzCYAi1guA

--------------------

** Tuesday November 2, 2021 at 11:00AM EDT**

**Title: Scalable Inference of Phylogentetic Networks**

by **Claudia Solis-Lemus** (University of Wisconsin).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2021#49]]

Read the articles : [[https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005896]]; [[https://arxiv.org/abs/2010.01758]]

Watch the webinar : https://www.youtube.com/watch?v=J9HjsJ9PaGI

--------------------

** Thursday January 28, 2021 at 11:00AM EDT**

**Title: SaGePhy: A phylogenetic simulation framework for gene and subgene evolution**

by **Soumya Kundu** (University of Connecticut).

Read the summary : [[https://www.iscb.org/cms_addon/academy/history?year=2021#32]]

Read the article : https://academic.oup.com/bioinformatics/article/35/18/3496/5305633

Watch the webinar : https://www.youtube.com/watch?v=P8P_yDeInN4

--------------------

**Wednesday September 30, 2020 at 11:00AM EDT**

**RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference**

by **Alexey Kozlov and Alexandros Stamatakis** (Heidelberg Institute for Theoretical Studies).

Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#24

Read the article : https://academic.oup.com/bioinformatics/article/35/21/4453/5487384

Watch the webinar : https://www.youtube.com/watch?v=nSLVcgPfUUo

--------------------

**Monday August 24, 2020**

**Unravelling the mystery of orphan genes to understand the origins of genetic novelty**

presented by **Nikos Vakirlis** (Alexander Fleming Biomedical Sciences Research Center).

Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#22

Read the articles : https://doi.org/10.7554/eLife.53500 ; https://doi.org/10.1038/s41467-020-14500-z

Watch the webinar : https://youtu.be/ScGPP19WWE8

--------------------

**Tuesday July 7, 2020**

**Genetic Basis Of De Novo Appearance Of Carotenoid Ornamentation In Bare-Parts Of Canaries**
 
presented by **Malgorzata Gazda** (Universidade do Porto).

Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#18

Read the article : https://doi.org/10.1093/molbev/msaa006

Watch the webinar : https://youtu.be/lxD6XDkbmV8

--------------------

**Friday June 12, 2020**

**Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies**

presented by **Erfan Sayyari** (UCSD).

Read the summary : https://www.iscb.org/cms_addon/academy/history?year=2020#14

Read the article : https://doi.org/10.1093/molbev/msw079

Watch the webinar : https://youtu.be/Ud7Sf9zsT5w

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